2021
Chen L, Zhai Y, Wang Y, Fearon ER, Núñez G, Inohara N, Cho KR. Altering the Microbiome Inhibits Tumorigenesis in a Mouse Model of Oviductal High-Grade Serous Carcinoma. Cancer Res. 2021 Jun 15;81(12):3309-3318. doi: 10.1158/0008-5472.CAN-21-0106. Epub 2021 Apr 16. PMID: 33863776; PMCID: PMC8260454.
Baker JM, Hinkle KJ, McDonald RA, Brown CA, Falkowski NR, Huffnagle GB, Dickson RP. Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota. Microbiome. 2021 May 5;9(1):99. doi: 10.1186/s40168-021-01055-4. PMID: 33952355.
Grasberger H, Magis AT, Sheng E, Conomos MP, Zhang M, Garzotto LS, Hou G, Bishu S, Nagao-Kitamoto H, El-Zaatari M, Kitamoto S, Kamada N, Stidham RW, Akiba Y, Kaunitz J, Haberman Y, Kugathasan S, Denson LA, Omenn GS, Kao JY. DUOX2 variants associate with preclinical disturbances in microbiota-immune homeostasis and increased inflammatory bowel disease risk. J Clin Invest. 2021 May 3;131(9):e141676. doi: 10.1172/JCI141676. PMID: 33651715; PMCID: PMC8087203.
Lipinski JH, Zhou X, Gurczynski SJ, Erb-Downward JR, Dickson RP, Huffnagle GB, Moore BB, O'Dwyer DN. Cage environment regulates gut microbiota independent of toll-like receptors. Infect Immun. 2021 May 3:IAI.00187-21. doi: 10.1128/IAI.00187-21. Epub ahead of print. PMID: 33941577.
Vornhagen J, Bassis CM, Ramakrishnan S, Hein R, Mason S, Bergman Y, Sunshine N, Fan Y, Holmes CL, Timp W, Schatz MC, Young VB, Simner PJ, Bachman MA. A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor. PLoS Pathog. 2021 Apr 30;17(4):e1009537. doi: 10.1371/journal.ppat.1009537. PMID: 33930099.
Alpert T, Brito AF, Lasek-Nesselquist E, Rothman J, Valesano AL, MacKay MJ, Petrone ME, Breban MI, Watkins AE, Vogels CBF, Kalinich CC, Dellicour S, Russell A, Kelly JP, Shudt M, Plitnick J, Schneider E, Fitzsimmons WJ, Khullar G, Metti J, Dudley JT, Nash M, Beaubier N, Wang J, Liu C, Hui P, Muyombwe A, Downing R, Razeq J, Bart SM, Grills A, Morrison SM, Murphy S, Neal C, Laszlo E, Rennert H, Cushing M, Westblade L, Velu P, Craney A, Cong L, Peaper DR, Landry ML, Cook PW, Fauver JR, Mason CE, Lauring AS, St George K, MacCannell DR, Grubaugh ND. Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States. Cell. 2021 Apr 3:S0092-8674(21)00434-7. doi: 10.1016/j.cell.2021.03.061. Epub ahead of print. PMID: 33891875; PMCID: PMC8018830.
Leslie JL, Jenior ML, Vendrov KC, Standke AK, Barron MR, O'Brien TJ, Unverdorben L, Thaprawat P, Bergin IL, Schloss PD, Young VB. Protection from Lethal Clostridioides difficile Infection via Intraspecies Competition for Cogerminant. mBio. 2021 Mar 30;12(2):e00522-21. doi: 10.1128/mBio.00522-21. PMID: 33785619; PMCID: PMC8092246.
Bodawatta KH, Freiberga I, Puzejova K, Sam K, Poulsen M, Jønsson KA. Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets. Anim Microbiome. 2021 Feb 18;3(1):20. doi: 10.1186/s42523-021-00076-6. PMID: 33602335; PMCID: PMC7893775.
Alpert T, Lasek-Nesselquist E, Brito AF, Valesano AL, Rothman J, MacKay MJ, Petrone ME, Breban MI, Watkins AE, Vogels CBF, Russell A, Kelly JP, Shudt M, Plitnick J, Schneider E, Fitzsimmons WJ, Khullar G, Metti J, Dudley JT, Nash M, Wang J, Liu C, Hui P, Muyombwe A, Downing R, Razeq J, Bart SM, Murphy S, Neal C, Laszlo E, Landry ML, Cook PW, Fauver JR, Mason CE, Lauring AS, St George K, MacCannell DR, Grubaugh ND. Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States. medRxiv [Preprint]. 2021 Feb 12:2021.02.10.21251540. doi: 10.1101/2021.02.10.21251540. PMID: 33594373; PMCID: PMC7885932.
Kaul DR, Valesano AL, Petrie JG, Sagana R, Lyu D, Lin J, Stoneman E, Smith LM, Lephart P, Lauring AS. Donor To Recipient Transmission Of SARS-CoV-2 By Lung Transplantation Despite Negative Donor Upper Respiratory Tract Testing. Am J Transplant. 2021 Feb 10. doi: 10.1111/ajt.16532. Epub ahead of print. PMID: 33565705.
Cho CS, Xi J,4, Park SR, Hsu JE, Kim M, Jun G, Kang HM, Lee JH. Seq-Scope: Submicrometer-resolution spatial transcriptomics for single cell and subcellular studies. bioRxiv. Jan 2021. doi: https://doi.org/10.1101/2021.01.25.427807
Valesano AL, Rumfelt KE, Dimcheff DE, Blair CN, Fitzsimmons WJ, Petrie JG, Martin ET, Lauring AS. Temporal dynamics of SARS-CoV-2 mutation accumulation within and across infected hosts. bioRxiv [Preprint]. 2021 Jan 20:2021.01.19.427330. doi: 10.1101/2021.01.19.427330. PMID: 33501443; PMCID: PMC7836113.
Combs MP, Wheeler DS, Luth JE, Falkowski NR, Walker NM, Erb-Downward JR, Lama VN, Dickson RP. Lung microbiota predict chronic rejection in healthy lung transplant recipients: a prospective cohort study. Lancet Respir Med. 2021 Jan 15:S2213-2600(20)30405-7. doi: 10.1016/S2213-2600(20)30405-7. Epub ahead of print. PMID: 33460570.
2020
Lee AA, Rao K, Limsrivilai J, Gillilland M, Malamet B, Briggs E, Young VB, Higgins PDR. Temporal Gut Microbial Changes Predict Recurrent Clostridiodes Difficile Infection in Patients With and Without Ulcerative Colitis. Inflamm Bowel Dis. 2020 Oct 23;26(11):1748-1758. doi: 10.1093/ibd/izz335. PMID: 31971239; PMCID: PMC7755141.
Zhou H, Zhou SY, Gillilland M 3rd, Li JY, Lee A, Gao J, Zhang G, Xu X, Owyang C. Bile acid toxicity in Paneth cells contributes to gut dysbiosis induced by high-fat feeding. JCI Insight. 2020 Oct 15;5(20):e138881. doi: 10.1172/jci.insight.138881. PMID: 33055426; PMCID: PMC7605541.
Ohno M, Hasegawa M, Hayashi A, Caballero-Flores G, Alteri CJ, Lawley TD, Kamada N, Núñez G, Inohara N. Lipopolysaccharide O structure of adherent and invasive Escherichia coli regulates intestinal inflammation via complement C3. PLoS Pathog. 2020 Oct 7;16(10):e1008928. doi: 10.1371/journal.ppat.1008928. PMID: 33027280; PMCID: PMC7571687.
Ashley SL, Sjoding MW, Popova AP, Cui TX, Hoostal MJ, Schmidt TM, Branton WR, Dieterle MG, Falkowski NR, Baker JM, Hinkle KJ, Konopka KE, Erb-Downward JR, Huffnagle GB, Dickson RP. Lung and gut microbiota are altered by hyperoxia and contribute to oxygen-induced lung injury in mice. Sci Transl Med. 2020 Aug 12;12(556):eaau9959. doi: 10.1126/scitranslmed.aau9959. PMID: 32801143; PMCID: PMC7732030.
Hawken SE, Hayden MK, Lolans K, Yelin RD, Weinstein RA, Lin MY, Snitkin ES. Cohorting KPC+ Klebsiella pneumoniae (KPC-Kp)-positive patients: A genomic exposé of cross-colonization hazards in a long-term acute-care hospital (LTACH). Infect Control Hosp Epidemiol. 2020 Oct;41(10):1162-1168. doi: 10.1017/ice.2020.261. Epub 2020 Jun 23. PMID: 32624030.
Bodawatta KH, Schierbech SK, Petersen NR, Sam K, Bos N, Jønsson KA, Poulsen M. Great Tit (Parus major) Uropygial Gland Microbiomes and Their Potential Defensive Roles. Front Microbiol. 2020 Jul 28;11:1735. doi: 10.3389/fmicb.2020.01735. PMID: 32849371; PMCID: PMC7401573.
Kitamoto S, Nagao-Kitamoto H, Jiao Y, Gillilland MG 3rd, Hayashi A, Imai J, Sugihara K, Miyoshi M, Brazil JC, Kuffa P, Hill BD, Rizvi SM, Wen F, Bishu S, Inohara N, Eaton KA, Nusrat A, Lei YL, Giannobile WV, Kamada N. The Intermucosal Connection between the Mouth and Gut in Commensal Pathobiont-Driven Colitis. Cell. 2020 Jul 23;182(2):447-462.e14. doi: 10.1016/j.cell.2020.05.048. Epub 2020 Jun 16. PMID: 32758418; PMCID: PMC7414097.
Bodawatta KH, Puzejova K, Sam K, Poulsen M, Jønsson KA. Cloacal swabs and alcohol bird specimens are good proxies for compositional analyses of gut microbial communities of Great tits (Parus major). Anim Microbiome. 2020 Mar 17;2(1):9. doi: 10.1186/s42523-020-00026-8. PMID: 33499943; PMCID: PMC7807456.
Nagao-Kitamoto H, Leslie JL, Kitamoto S, Jin C, Thomsson KA, Gillilland MG 3rd, Kuffa P, Goto Y, Jenq RR, Ishii C, Hirayama A, Seekatz AM, Martens EC, Eaton KA, Kao JY, Fukuda S, Higgins PDR, Karlsson NG, Young VB, Kamada N. Interleukin-22-mediated host glycosylation prevents Clostridioides difficile infection by modulating the metabolic activity of the gut microbiota. Nat Med. 2020 Apr;26(4):608-617. doi: 10.1038/s41591-020-0764-0. Epub 2020 Feb 17. PMID: 32066975; PMCID: PMC7160049.
Das NK, Schwartz AJ, Barthel G, Inohara N, Liu Q, Sankar A, Hill DR, Ma X, Lamberg O, Schnizlein MK, Arqués JL, Spence JR, Nunez G, Patterson AD, Sun D, Young VB, Shah YM. Microbial Metabolite Signaling Is Required for Systemic Iron Homeostasis. Cell Metab. 2020 Jan 7;31(1):115-130.e6. doi: 10.1016/j.cmet.2019.10.005. Epub 2019 Nov 7. PMID: 31708445; PMCID: PMC6949377.
Kitamoto S, Alteri CJ, Rodrigues M, Nagao-Kitamoto H, Sugihara K, Himpsl SD, Bazzi M, Miyoshi M, Nishioka T, Hayashi A, Morhardt TL, Kuffa P, Grasberger H, El-Zaatari M, Bishu S, Ishii C, Hirayama A, Eaton KA, Dogan B, Simpson KW, Inohara N, Mobley HLT, Kao JY, Fukuda S, Barnich N, Kamada N. Dietary L-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut. Nat Microbiol. 2020 Jan;5(1):116-125. doi: 10.1038/s41564-019-0591-6. Epub 2019 Nov 4. PMID: 31686025; PMCID: PMC6925351.
Lee Y, Sugihara K, Gillilland MG 3rd, Jon S, Kamada N, Moon JJ. Hyaluronic acid-bilirubin nanomedicine for targeted modulation of dysregulated intestinal barrier, microbiome and immune responses in colitis. Nat Mater. 2020 Jan;19(1):118-126. doi: 10.1038/s41563-019-0462-9. Epub 2019 Aug 19. PMID: 31427744; PMCID: PMC6923573.
Saund K, Rao K, Young VB, Snitkin ES. Genetic Determinants of Trehalose Utilization Are Not Associated With Severe Clostridium difficile Infection Outcome. Open Forum Infect Dis. 2020 Jan 4;7(1):ofz548. doi: 10.1093/ofid/ofz548. PMID: 31976356; PMCID: PMC6966243.
2019
Sze MA, Topçuoğlu BD, Lesniak NA, Ruffin MT 4th, Schloss PD. Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure. mBio. 2019 Jul 2;10(4):e01454-19. doi: 10.1128/mBio.01454-19. PMID: 31266879; PMCID: PMC6606814.
Djuric Z, Bassis CM, Plegue MA, Sen A, Turgeon DK, Herman K, Young VB, Brenner DE, Ruffin MT. Increases in Colonic Bacterial Diversity after ω-3 Fatty Acid Supplementation Predict Decreased Colonic Prostaglandin E2 Concentrations in Healthy Adults. J Nutr. 2019 Jul 1;149(7):1170-1179. doi: 10.1093/jn/nxy255. PMID: 31051496; PMCID: PMC6602899.
Smith BJ, Miller RA, Ericsson AC, Harrison DC, Strong R, Schmidt TM. Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice. BMC Microbiol. 2019 Jun 13;19(1):130. doi: 10.1186/s12866-019-1494-7. PMID: 31195972; PMCID: PMC6567620.
Baxter NT, Lesniak NA, Sinani H, Schloss PD, Koropatkin NM. The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome [published correction appears in mSphere. 2019 May 22;4(3):]. mSphere. 2019;4(1):e00528-18. Published 2019 Feb 6. doi:10.1128/mSphere.00528-18. Erratum in: mSphere. 2019 May 22;4(3): PMID: 30728281; PMCID: PMC6365613.
Sze MA, Schloss PD. The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data. mSphere. 2019 May 22;4(3):e00163-19. doi: 10.1128/mSphere.00163-19. PMID: 31118299; PMCID: PMC6531881.
Seekatz AM, Schnizlein MK, Koenigsknecht MJ, Baker JR, Hasler WL, Bleske BE, Young VB, Sun D. Spatial and Temporal Analysis of the Stomach and Small-Intestinal Microbiota in Fasted Healthy Humans. mSphere. 2019 Mar 13;4(2):e00126-19. doi: 10.1128/mSphere.00126-19. PMID: 30867328; PMCID: PMC6416366.
O'Dwyer DN, Ashley SL, Gurczynski SJ, Xia M, Wilke C, Falkowski NR, Norman KC, Arnold KB, Huffnagle GB, Salisbury ML, Han MK, Flaherty KR, White ES, Martinez FJ, Erb-Downward JR, Murray S, Moore BB, Dickson RP. Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis. Am J Respir Crit Care Med. 2019 May 1;199(9):1127-1138. doi: 10.1164/rccm.201809-1650OC. PMID: 30789747; PMCID: PMC6515865.
Flowers SA, Baxter NT, Ward KM, Kraal AZ, McInnis MG, Schmidt TM, Ellingrod VL. Effects of Atypical Antipsychotic Treatment and Resistant Starch Supplementation on Gut Microbiome Composition in a Cohort of Patients with Bipolar Disorder or Schizophrenia. Pharmacotherapy. 2019 Feb;39(2):161-170. doi: 10.1002/phar.2214. Epub 2019 Feb 3. PMID: 30620405; PMCID: PMC6386623.
Leslie JL, Vendrov KC, Jenior ML, Young VB. The Gut Microbiota Is Associated with Clearance of Clostridium difficile Infection Independent of Adaptive Immunity. mSphere. 2019 Jan 30;4(1):e00698-18. doi: 10.1128/mSphereDirect.00698-18. PMID: 30700514; PMCID: PMC6354811.
Baxter NT, Schmidt AW, Venkataraman A, Kim KS, Waldron C, Schmidt TM. Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers. mBio. 2019 Jan 29;10(1):e02566-18. doi: 10.1128/mBio.02566-18. PMID: 30696735; PMCID: PMC6355990.
2018
O'Dwyer DN, Zhou X, Wilke CA, Xia M, Falkowski NR, Norman KC, Arnold KB, Huffnagle GB, Murray S, Erb-Downward JR, Yanik GA, Moore BB, Dickson RP. Lung Dysbiosis, Inflammation, and Injury in Hematopoietic Cell Transplantation. Am J Respir Crit Care Med. 2018 Nov 15;198(10):1312-1321. doi: 10.1164/rccm.201712-2456OC. PMID: 29878854; PMCID: PMC6290939.
Turula H, Bragazzi Cunha J, Mainou BA, Ramakrishnan SK, Wilke CA, Gonzalez-Hernandez MB, Pry A, Fava J, Bassis CM, Edelman J, Shah YM, Corthesy B, Moore BB, Wobus CE. Natural Secretory Immunoglobulins Promote Enteric Viral Infections. J Virol. 2018 Nov 12;92(23):e00826-18. doi: 10.1128/JVI.00826-18. PMID: 30232191; PMCID: PMC6232472.
Eaton K, Pirani A, Snitkin ES, Reproducibility Project: Cancer Biology. Replication Study: Intestinal inflammation targets cancer-inducing activity of the microbiota. Elife. 2018 Oct 8;7:e34364. doi: 10.7554/eLife.34364. PMID: 30295289; PMCID: PMC6175580.
Seekatz AM, Theriot CM, Rao K, Chang YM, Freeman AE, Kao JY, Young VB. Restoration of short chain fatty acid and bile acid metabolism following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection. Anaerobe. 2018 Oct;53:64-73. doi: 10.1016/j.anaerobe.2018.04.001. Epub 2018 Apr 12. PMID: 29654837; PMCID: PMC6185828.
Truax AD, Chen L, Tam JW, Cheng N, Guo H, Koblansky AA, Chou WC, Wilson JE, Brickey WJ, Petrucelli A, Liu R, Cooper DE, Koenigsknecht MJ, Young VB, Netea MG, Stienstra R, Sartor RB, Montgomery SA, Coleman RA, Ting JP. The Inhibitory Innate Immune Sensor NLRP12 Maintains a Threshold against Obesity by Regulating Gut Microbiota Homeostasis. Cell Host Microbe. 2018 Sep 12;24(3):364-378.e6. doi: 10.1016/j.chom.2018.08.009. PMID: 30212649; PMCID: PMC6161752.
Fujiwara H, Docampo MD, Riwes M, Peltier D, Toubai T, Henig I, Wu SJ, Kim S, Taylor A, Brabbs S, Liu C, Zajac C, Oravecz-Wilson K, Sun Y, Núñez G, Levine JE, van den Brink MRM, Ferrara JLM, Reddy P. Microbial metabolite sensor GPR43 controls severity of experimental GVHD. Nat Commun. 2018 Sep 10;9(1):3674. doi: 10.1038/s41467-018-06048-w. PMID: 30201970; PMCID: PMC6131147.
Bodawatta KH, Sam K, Jønsson KA, Poulsen M. Comparative Analyses of the Digestive Tract Microbiota of New Guinean Passerine Birds. Front Microbiol. 2018 Aug 10;9:1830. doi: 10.3389/fmicb.2018.01830. PMID: 30147680; PMCID: PMC6097311.
Seekatz AM, Bassis CM, Fogg L, Moore NM, Rhee Y, Lolans K, Weinstein RA, Lin MY, Young VB, Hayden MK; Centers for Disease Control and Prevention Epicenters Program. Gut Microbiota and Clinical Features Distinguish Colonization With Klebsiella pneumoniae Carbapenemase-Producing Klebsiella pneumoniae at the Time of Admission to a Long-term Acute Care Hospital. Open Forum Infect Dis. 2018 Jul 31;5(8):ofy190. doi: 10.1093/ofid/ofy190. PMID: 30151415; PMCID: PMC6101546.
Singer BH, Dickson RP, Denstaedt SJ, Newstead MW, Kim K, Falkowski NR, Erb-Downward JR, Schmidt TM, Huffnagle GB, Standiford TJ. Bacterial Dissemination to the Brain in Sepsis. Am J Respir Crit Care Med. 2018 Mar 15;197(6):747-756. doi: 10.1164/rccm.201708-1559OC. PMID: 29232157; PMCID: PMC5855074.
Scales BS, Erb-Downward JR, Falkowski NR, LiPuma JJ, Huffnagle GB. Genome Sequences of 12 Pseudomonas lundensis Strains Isolated from the Lungs of Humans. Genome Announc. 2018 Feb 15;6(7):e01461-17. doi: 10.1128/genomeA.01461-17. PMID: 29449399; PMCID: PMC5814480.
Zhou SY, Gillilland M 3rd, Wu X, Leelasinjaroen P, Zhang G, Zhou H, Ye B, Lu Y, Owyang C. FODMAP diet modulates visceral nociception by lipopolysaccharide-mediated intestinal inflammation and barrier dysfunction. J Clin Invest. 2018 Jan 2;128(1):267-280. doi: 10.1172/JCI92390. Epub 2017 Nov 27. PMID: 29202473; PMCID: PMC5749529.
2017
Hill DR, Huang S, Nagy MS, Yadagiri VK, Fields C, Mukherjee D, Bons B, Dedhia PH, Chin AM, Tsai YH, Thodla S, Schmidt TM, Walk S, Young VB, Spence JR. Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium. Elife. 2017 Nov 7;6:e29132. doi: 10.7554/eLife.29132. PMID: 29110754; PMCID: PMC5711377.
Bassis CM, Allsworth JE, Wahl HN, Sack DE, Young VB, Bell JD. Effects of intrauterine contraception on the vaginal microbiota. Contraception. 2017 Sep;96(3):189-195. doi: 10.1016/j.contraception.2017.05.017. Epub 2017 Jun 15. PMID: 28624570; PMCID: PMC5701660.
Kim YG, Sakamoto K, Seo SU, Pickard JM, Gillilland MG 3rd, Pudlo NA, Hoostal M, Li X, Wang TD, Feehley T, Stefka AT, Schmidt TM, Martens EC, Fukuda S, Inohara N, Nagler CR, Núñez G. Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens. Science. 2017 Apr 21;356(6335):315-319. doi: 10.1126/science.aag2029. PMID: 28428425; PMCID: PMC6082366.
Bassis CM, Moore NM, Lolans K, Seekatz AM, Weinstein RA, Young VB, Hayden MK; CDC Prevention Epicenters Program. Comparison of stool versus rectal swab samples and storage conditions on bacterial community profiles. BMC Microbiol. 2017 Mar 31;17(1):78. doi: 10.1186/s12866-017-0983-9. PMID: 28359329; PMCID: PMC5374586.
Sakamoto K, Kim YG, Hara H, Kamada N, Caballero-Flores G, Tolosano E, Soares MP, Puente JL, Inohara N, Núñez G. IL-22 Controls Iron-Dependent Nutritional Immunity Against Systemic Bacterial Infections. Sci Immunol. 2017 Feb;2(8): eaai8371. doi: 10.1126/sciimmunol.aai8371. Epub 2017 Feb 3. PMID: 28286877; PMCID: PMC5345941.
Saqui-Salces M, Tsao AC, Gillilland MG 3rd, Merchant JL. Weight gain in mice on a high caloric diet and chronically treated with omeprazole depends on sex and genetic background. Am J Physiol Gastrointest Liver Physiol. 2017 Jan 1;312(1):G15-G23. doi: 10.1152/ajpgi.00211.2016. Epub 2016 Nov 3. PMID: 27810953; PMCID: PMC5283905.
2016
Huffnagle GB, Dickson RP, Lukacs NW. The respiratory tract microbiome and lung inflammation: a two-way street. Mucosal Immunol. 2017 Mar;10(2):299-306. doi: 10.1038/mi.2016.108. Epub 2016 Dec 14. PMID: 27966551; PMCID: PMC5765541.
Desai MS, Seekatz AM, Koropatkin NM, Kamada N, Hickey CA, Wolter M, Pudlo NA, Kitamoto S, Terrapon N, Muller A, Young VB, Henrissat B, Wilmes P, Stappenbeck TS, Núñez G, Martens EC. A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility. Cell. 2016 Nov 17;167(5):1339-1353.e21. doi: 10.1016/j.cell.2016.10.043. PMID: 27863247; PMCID: PMC5131798.
Dickson RP, Singer BH, Newstead MW, Falkowski NR, Erb-Downward JR, Standiford TJ, Huffnagle GB. Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome. Nat Microbiol. 2016 Jul 18;1(10):16113. doi: 10.1038/nmicrobiol.2016.113. PMID: 27670109; PMCID: PMC5076472.
Venkataraman A, Sieber JR, Schmidt AW, Waldron C, Theis KR, Schmidt TM. Variable responses of human microbiomes to dietary supplementation with resistant starch. Microbiome. 2016 Jun 29;4(1):33. doi: 10.1186/s40168-016-0178-x. PMID: 27357127; PMCID: PMC4928258.
Kim D, Kim YG, Seo SU, Kim DJ, Kamada N, Prescott D, Chamaillard M, Philpott DJ, Rosenstiel P, Inohara N, Núñez G. Nod2-mediated recognition of the microbiota is critical for mucosal adjuvant activity of cholera toxin. Nat Med. 2016 May;22(5):524-30. doi: 10.1038/nm.4075. Epub 2016 Apr 11. Erratum in: Nat Med. 2016 Aug 4;22(8):961. PMID: 27064448; PMCID: PMC4860092.
Nagao-Kitamoto H, Shreiner AB, Gillilland MG 3rd, Kitamoto S, Ishii C, Hirayama A, Kuffa P, El-Zaatari M, Grasberger H, Seekatz AM, Higgins PD, Young VB, Fukuda S, Kao JY, Kamada N. Functional Characterization of Inflammatory Bowel Disease-Associated Gut Dysbiosis in Gnotobiotic Mice. Cell Mol Gastroenterol Hepatol. 2016 Mar 3;2(4):468-481. doi: 10.1016/j.jcmgh.2016.02.003. PMID: 27795980; PMCID: PMC5042563.
Dickson RP, Erb-Downward JR, Martinez FJ, Huffnagle GB. The Microbiome and the Respiratory Tract. Annu Rev Physiol. 2016 February 10; 78: 481–504. doi:10.1146/annurev-physiol-021115-105238.
2015
Dickson RP. The microbiome and critical illness. Lancet Respir Med. 2016 Jan;4(1):59-72. doi: 10.1016/S2213-2600(15)00427-0. Epub 2015 Dec 12. PMID: 26700442; PMCID: PMC4752077.